alphagenome.data.junction_data.get_junctions_to_plot

alphagenome.data.junction_data.get_junctions_to_plot#

alphagenome.data.junction_data.get_junctions_to_plot(*, predictions, name, strand, k_threshold=0.0)[source]#

Gets a list of junctions to plot.

Filters the junctions in the predictions by ontology term and strand, and applies a threshold on the k value (read count).

Parameters:

  • predictions (JunctionData) – A JunctionData object containing junction predictions.

  • name (str) – The name to filter by.

  • strand (str) – The strand to filter by (‘+’ or ‘-‘).

  • k_threshold (float | None (default: 0.0)) – The minimum k value for a junction to be included. If None, use 5% of the maximum value.

Return type:

list[Junction]

Returns:

A list of Junction objects to plot.

Raises:

ValueError – If more than one track is found for the specified ontology term.

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