alphagenome.atlas.atlas.AtlasClient

alphagenome.atlas.atlas.AtlasClient#

class alphagenome.atlas.atlas.AtlasClient(stub, metadata=())[source]#

Client for interacting with AlphaGenome Atlas scores.

Methods#

Table

query_interval(interval, *, requested_scorers)

Returns the scores for all Variants within an Interval.

query_variant(variant, *, requested_scorers)

Returns the scores for a single Variant within an Interval.

query_variants(variants, *, requested_scorers)

Returns the scores for a single Variant within an Interval.

scorer_metadata()

Returns the metadata for all scorers.
AtlasClient.query_interval(interval, *, requested_scorers, ontology_terms=None, gene_ids=None, gene_names=None, progress_bar=True, max_workers=10)[source]#

Returns the scores for all Variants within an Interval.

Return type:

Mapping[str, AnnData]

AtlasClient.query_variant(variant, *, requested_scorers, ontology_terms=None, gene_ids=None, gene_names=None)[source]#

Returns the scores for a single Variant within an Interval.

Return type:

Mapping[str, AnnData]

AtlasClient.query_variants(variants, *, requested_scorers, ontology_terms=None, gene_ids=None, gene_names=None, progress_bar=True, max_workers=10)[source]#

Returns the scores for a single Variant within an Interval.

Return type:

Mapping[str, AnnData]

AtlasClient.scorer_metadata()[source]#

Returns the metadata for all scorers.

Return type:

Mapping[str, ScorerMetadata]

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